Macrophages

UMAP projections show macrophage subsets


Heatmap shows top upregulated genes associated with inflammatory disease for CHIKV vs mock-infected macrophages


UMAP projections show examples of upregulated genes for CHIKV vs mock-infected macrophages


Heatmaps show mean expression of the top 50 markers from gene lists described by Culemann et al. Each replicate is plotted separately for each macrophage subset.

CCR2_ARG1_infiltrating



CCR2_IL1B_infiltrating



CX3CR1_lining



RELMa_interstitial



AQP1_interstitial



T cells

Genes upregulated in T cells from CHIKV vs mock-infected mice are shown below. All CD4+ or CD8+ T cells were grouped together.