UMAP projections show macrophage subsets
Heatmap shows top upregulated genes associated with inflammatory disease for CHIKV vs mock-infected macrophages
UMAP projections show examples of upregulated genes for CHIKV vs mock-infected macrophages
Heatmaps show mean expression of the top 50 markers from gene lists described by Culemann et al. Each replicate is plotted separately for each macrophage subset.
Genes upregulated in T cells from CHIKV vs mock-infected mice are shown below. All CD4+ or CD8+ T cells were grouped together.